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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678368589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TALE | ||||||||
Protein Properties | Length: 405aa MW: 44780.7 Da PI: 8.0882 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.4 | 1.2e-08 | 319 | 357 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + 678368589 319 MFQNflHPYPKDAEKHLLALKSGLTRSQVSNWFINARVR 357 6887789******************************88 PP | |||||||
2 | BELL | 66 | 7.4e-22 | 200 | 265 | 6 | 72 |
BELL 6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + kk +Ll ll+ Vd++Y+q+ ++++tvis+F+av++l++ ++++++Al +iS +++L+ +i+++i 678368589 200 ETKKKHLLGLLQLVDEQYNQCLDEIHTVISAFHAVTDLDP-NLHARFALPRISIMYKNLRGRISSHI 265 68**************************************.***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-11 | 140 | 263 | IPR006563 | POX domain |
Pfam | PF07526 | 3.3E-18 | 147 | 262 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.029 | 298 | 361 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.84E-12 | 301 | 362 | No hit | No description |
SMART | SM00389 | 7.4E-6 | 301 | 365 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-16 | 304 | 370 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 304 | 367 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-14 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MDMQTEAAAP LSYVLTETAS VYPADSLVQN SNQYHLQPSL FSSSLHEAFA GFSSDPRVSV 60 PGAPFSSDTY ECPRSIVGTS GVYGGFLPIE TACGNKFMSP QGGGGNTSQN EWLMNAASNH 120 LTSRFNNGLS LSLAANPSFI KPSKPFLGSA AFLHVMQEIL AEIASFALDH NICCSSEENR 180 VAANSIGGFS DQTRPFLGAE TKKKHLLGLL QLVDEQYNQC LDEIHTVISA FHAVTDLDPN 240 LHARFALPRI SIMYKNLRGR ISSHILAMGS DPKEGEVDSK CLIEKQWSLQ QLKKKDQHQL 300 WKPQRGLPEQ SVSVLKAWMF QNFLHPYPKD AEKHLLALKS GLTRSQVSNW FINARVRLWK 360 PMIEEMYAET NRRKSSSSSC RSIKNNQESS AALKTSSSIP TSPFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 307 | 365 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-14 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-14 | 307 | 364 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096935.1 | 1e-110 | PREDICTED: homeobox protein ATH1 isoform X2 | ||||
Swissprot | P48731 | 3e-87 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | S8CT00 | 1e-110 | S8CT00_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc08g065420.2.1 | 4e-97 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8261 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 3e-77 | homeobox gene 1 |